Supplementary Data

New! Datasets (sets of predicted binding sites) from Bieda et al. (2006) (contact Mark Bieda for additional conditions)
Primer Sequences for known E2F targets	Note: These are primers to use for PCR after chromatin immunoprecipitation for common, validated E2F targets.
Primer Sequences Detailed ChIP-chip protocol	E2F6 negatively regulates BRCA1 in human cancer cells without methylation of histone H3 on Lysine 9. Oberley M.J., Inman D.R., Farnham P.J. JBC, 278: 42466-76, 2003.
CpG Island Sequences Primer Sequences	Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase. Wells et al. Oncogene, (22) 2003.
	Myc recruits P-TEFb to mediate the final step in the transcriptional activation of the cad promoter Eberhardy, S.E. and P.J. Farnham. JBC, (277) 2002.
	The identification of E2F1-specific target genes. Wells, J.W., Graveel, C.R., Bartley, S.M., Madore, S.J., and Farnham, P.J. PNAS, (99), 3890-3895, 2002.
	Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis Weinmann, A.S., Yan, P.S., Oberley, M.J, Huang, T.H., and Farnham, P.J. Genes and Development, (16), 235-244, 2002.
	c-Myc mediates activation of the cad promoter via a post-RNa polymerase II recruitment mechanism Eberhardy, S.R. and Farnham, P.J. Journal of Biological Chemistry, (276), 48562-48571, 2001.
	Use of chromatin immunoprecipitation to clone novel E2F target promoters Weinmann, A.S., Bartley, S.M., Zhang, T., Zhang, M.Q., and Farnham, P.J. Molecular and Cellular Biology, (21), 6820-6832, 2001.
	Expression profiling and identification of novel genes in hepatocellular carcinomas Graveel, C.R., Jatkoe, T., Madore, S.J., Holt, A.L., and Farnham, P.J. Oncogene (20), 2704-2712, 2001.